Presentations

Talks

1. MFMS: Maximal frequent module set mining from multiple human gene expression datasets
   ACM SIGKDD International Workshop on Data Mining in Bioinformatics (BIOKDD), August 2013.

2. TCF: Tensor clustering framework on multiple-biomarker tensors
   Bogazici University, January 2012.

3. TCF: Tensor clustering framework on multiple-biomarker tensors
   Middle East Technical University, January 2012.

4. TCF: Tensor clustering framework on multiple-biomarker tensors
   Bilkent University, January 2012.

5. Data-driven insights into deletions of Mycobacterium tuberculosis complex chromosomal DR region using spoligoforests
   IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Atlanta, November 12-15, 2011.

6. Examining the sublineage structure of Mycobacterium tuberculosis complex strains with multiple-biomarker tensors
   IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Hong Kong, December 18-21, 2010.

7. Extracting Associations from Activities
   NSF Cyber-Enabled Discovery and Innovation Symposium, Troy, NY, September 2007.

Posters

1. UBF: Unified Biclustering Framework
   C. Ozcaglar, B. Yener, K.P. Bennett
   New York Academy of Sciences (NYAS) 7th Annual Machine Learning Symposium, NYC, October 2012.

2. A clustering framework for Mycobacterium tuberculosis complex strains using multiple-biomarker tensors
   C. Ozcaglar, A. Shabbeer, S. Vandenberg, B. Yener, K.P. Bennett
   RPI-NSF Workshop on Multiscale Modeling of Complex Data, Troy, NY, September 2011.

3. Insights into Camin-Sokal Parsimony and evolution of spoligotypes via spoligoforests
   C. Ozcaglar, A. Shabbeer, S. Vandenberg, B. Yener, K.P. Bennett
   New York Academy of Sciences (NYAS) Symposium on Imaging, Visualization and Simulation, NYC, June 2011.

4. Multiple-biomarker tensor analysis for tuberculosis lineage identification
   C. Ozcaglar, A. Shabbeer, S. Vandenberg, B. Yener, K.P. Bennett
   NIPS Workshop on Tensors, Kernels and Machine Learning, Whistler, BC, Canada, December 2010.

5. A clustering framework for Mycobacterium tuberculosis complex strains using multiple-biomarker tensors
   C. Ozcaglar, A. Shabbeer, M. Aminian, B. Yener, K. P. Bennett
   New York Academy of Sciences (NYAS) 5th Annual Machine Learning Symposium, NYC, October 2010.

6. Examining sublineage structure of Mycobacterium tuberculosis complex strains with multiway modeling
   C. Ozcaglar, A. Shabbeer, M. Aminian, B. Yener, K. P. Bennett
   Eigenvector University, Seattle, Washington, May 2010.
   Best poster award